Best Accounting Software for Ecommerce Store

Ecommerce is one of the fastest growing industries in the world. Businesses from all over are seeing the power and profitability of selling their products online. But, that doesn’t mean that there aren’t challenges when it comes to tracking your sales and running your store. From taxes to inventory to shipping, ecommerce requires a lot of in-depth accounting knowledge, which isn’t as simple as one would imagine.

Ecommerce accounting software can be used for a variety of reasons. As per the current market statistics, nearly 40% of sales from retailers are done online. One of the main reasons for this is that such transactions are hassle-free, thanks to ecommerce software’s availability in the market. For example- If you are running a retailing business, then you can keep your inventory management in check with the aid of this tool.

As an eCommerce business grows so does the need for automation. There are a number of eCommerce accounting software solutions available with varying price points and features. Some solutions are free, which begs the question as to why anyone would pay for anything. However, what you get with a free solution and what you get with a paid solution is always different. In this article, we will be discussing exactly that – what ecommerce accounting software free means for your business and how paid solutions usually come out ahead of the game in the long run.

Running an e-commerce store by yourself might seem easy, but it’s not. You will find yourself doing quite a few things – processing orders, receiving payments, managing the stock, making sure your website is up and running and so on. And you probably won’t have much time to spend with marketing your products too… That’s why you should consider using accounting software to manage your e-commerce business.

Accurate accounting means better business

No two businesses are exactly alike, and an accounting solution that works well for one business may not work at all for another.

While there’s a great deal of overlap between the small business accounting software above, only you can decide which tool is right for your business. Some business owners may see sophisticated reporting functionality as an essential feature, whereas some may prioritize automated reconciliation. Before investing in a new accounting system, it may be worth taking advantage of a few free trials before committing to a decision.

FreshBooks: Best for Ecommerce Companies Seeking Outstanding Customer Service

FreshBooks is an accounting software service rivaling Xero in project accounting. However, FreshBooks caters more to self-employed individuals and freelancers, making it one of our choices for best accounting software for freelancers. FreshBooks best fits service-based businesses because it combines project management and accounting into one program, but it doesn’t provide inventory accounting.

FreshBooks logo.

Overall Score: 6.44 OUT OF 10

Pros

  • Direct integrations with Shopify and Squarespace
  • Integrate with third-party connector OneSaas
  • Good customer service available via telephone

Cons

  • Plans limit the number of billable customers
  • Inventory accounting is very limited
  • Cannot determine sales tax rate by location or file sales tax returns

Plans & Pricing

All plans include one user with additional users available for $10 per month:

  • FreshBooks Lite: $15 per month for five billable clients
  • FreshBooks Plus: $25 per month for 50 billable clients
  • FreshBooks Premium: $50 per month for 500 billable clients
  • FreshBooks Select: Custom priced for unlimited billable clients and specialized features

You may try FreshBooks free for 30 days.Read FreshBooks Review

Features

  • A/R management: Invoicing is another strength of FreshBooks because it gives you the ability to personalize invoices. You can also manage customer balances within the module and send payment reminders. Self-managed ecommerce businesses can use FreshBooks to handle customer accounts and accept payments.
  • A/P management: Since FreshBooks lacks inventory management features, it doesn’t have A/P features for POs. However, its A/P system is flexible enough to handle small purchases of inventories and supplies needed for your operations. FreshBooks focuses on service items, making it suitable for service-based companies selling services online.
  • Great customer support: FreshBooks is famous for its outstanding customer support. You can contact them by phone or you can have them contact you. They also provide assistance by chatbot or live chat in case you need help. Their email address is also available for inquiries or complaints. If you need immediate help, FreshBooks offers robust self-help articles on their support page.

Our Expert Opinion

FreshBooks integrates with ecommerce platforms, and it can be used as an accounting software solution for self-managed ecommerce businesses. If you’re a service provider, FreshBooks fits your needs perfectly. On the contrary, product-based businesses will find FreshBooks lacking in terms of inventory management. However, if your ecommerce management system includes inventory management, you can use it instead to track inventories and import the balances to FreshBooks for financial reporting.

Wave: Best Free Accounting Software for Companies Willing To Use Zapier for Their Ecommerce Integrations

Wave is our choice for the overall best free accounting software because its accounting and invoicing features are totally free. You can send unlimited invoices to customers, set up unlimited companies, and keep track of your accounts on Wave for free. The major drawbacks to Wave are that it lacks inventory accounting, and any ecommerce integrations must be accomplished by creating zaps with Zapier. Zaps is their automated workflow that integrates apps and services.

Wave Logo.

Overall Score: 3.88 OUT OF 10

Pros

  • Free forever
  • Integrates with Zapier
  • Good basic accounting features

Cons

  • No direct ecommerce integrations or third-party connectors
  • Limited inventory accounting
  • Cannot determine sales tax rate by location or file sales tax returns

Plans & Pricing

Wave is totally free for accounting and invoicing.Read Wave Review

Features

  • A/R management: Wave’s A/R management may not be as robust as QuickBooks or Xero, but it’s outstanding, given that it’s a free service. With Wave, you can create invoices, accept short payments from customers, and manage customer balances. For small ecommerce businesses, Wave’s A/R features are more than enough.
  • A/P management: The A/P system of Wave is basic if compared to other accounting software. You can create vendors, manage billings, and record payments, but Wave doesn’t deal with advanced features like vendor credits, project billings, and POs.
  • Sales and income tax: As a free service, we’re satisfied that Wave accounts for sales taxes in the sale tax liability account automatically. If your ecommerce business sells products to different jurisdictions, automatic accounting for sales taxes is an efficient feature. Unfortunately, you can’t file and pay your taxes through Wave.

Our Expert Opinion

For a free option, Wave is worth considering. You can subscribe to Zapier to create zaps to ecommerce platforms, but that’s very time-consuming compared to the direct ecommerce integrations offered by the paid software in this guide. Wave’s features are simple and basic, and it best fits microbusinesses with minimal accounting needs. We don’t recommend Wave for companies larger than a microbusiness, since you’ll need advanced features like robust online payment channels, multi-channel retailing, and inventory management.

ZipBooks

  • Available for: Web application
  • Mobile app: iOS
  • Price: Plans begin at $15 per month
  • Free trial length: 30 days
  • Shopify app or integration: No

Aimed at business owners who might lack experience with bookkeeping, ZipBooks is a simple, lightweight small business accounting software tool that takes the headache out of accurate accounting.

Screenshot of accounting software tool ZipBook's primary reporting dashboard.
Image source: ZipBooks.

ZipBooks keeps everything as simple as possible. The product emphasizes the basics, such as accounts receivables, so users won’t be surprised by any complicated menus or intimidating features. ZipBooks’ statements and reports are similarly clean and minimal, focusing on the essential information entrepreneurs need to run their business.

The product’s Starter plan is free and includes unlimited invoicing, basic reporting, and a single bank account connection. Additional plans start at $15 per month.

Holded

  • Available for: Web application
  • Mobile app: Android, iOS
  • Price: Plans begin at 10€ (approx. US$13) per month
  • Free trial length: 14 days
  • Shopify app or integration: Yes

Even simple accounting can be time consuming, which is why Holded aims to automate much of the busywork inherent to bookkeeping so you can get on with actually running your business.

Holded is a cloud-based accounting tool that offers real-time insights into the finances of your business. Users can integrate Holded’s general ledger with a range of financial data sources to provide at-a-glance overviews of profits and losses, forecasting and reporting, and detailed accounting histories, all with just a few clicks.

Holded is a deeply integrated accounting solution that offers major time savings. Pricing starts at roughly $11 per month, with a 14-day free trial.

Sage 50cloud

  • Available for: Web application
  • Mobile app: No
  • Price: Plans begin at £65 (approx. US$82) per month
  • Free trial length: 30 days
  • Shopify app or integration: No

Sage 50cloud Accounting is a comprehensive, cloud-based accounting software product with extensive customization options and advanced functionality.

Image of Sage's small business accounting software with an example screen of a business's recent transactions
Image source: Software Advice.

The product’s Pro Accounting plan––the least expensive option, available for $50.58 per month––is aimed at smaller, independent businesses. It can handle a range of accounting tasks, including expense management, invoicing, and inventory tracking. Sage 50cloud Accounting also integrates seamlessly with Microsoft Office.

Sage’s other plans offer additional features, such as role-based security privileges and account management for multiple companies, but may be prohibitive for smaller businesses with more modest administrative budgets.

QuickBooks

Quick Overview

QuickBooks is our top recommended software with smart and simple accounting solutions for small businesses for expenses tracking, invoice customization and much more you can expect from an accounting tool. It was initially released in 1983 and launched in 1998 and it is serving businesses of all sizes for managing their invoices, inventory, expenses, and all other accounting needs. This software provides the best solution for your accounting needs at the best price.

Pricing and Plans

QuickBooks has monthly and yearly plans for its customers. This software has a 30-days free trial and three plans when you want to buy their services after trial.

These three plans are:

  • Simple Start – when you start your business – US$ 8.00 per month
  • Essentials – when you run your business – US$ 12.50 per month
  • Plus – When you grow your business – US$ 17.00 per month

Features

QuickBooks has the following prominent features:

  • It has an easy-to-use platform with instant navigation
  • All accounting tasks you can perform in just a few clicks
  • You can see customizable reports to analyze how your business is going
  • Safety and security of your data on a secure cloud storage
  • The online support team is always ready to assist you online and on a phone call

Why do we recommend QuickBooks?

We recommend you QuickBooks because of its customer-oriented features and platform. This software has an evolving mechanism to improve its features for providing you the best and up-to-date accounting solutions. Safety and adaptation are two major qualities that make it best to choose whether you just have an eCommerce startup or you want to run and grow your business with increased efficiency, this can be your best accounting companion.

FreeAgent

Quick Overview

FreeAgent is an award-winning software with all its accounting features and solutions to run your business more smoothly. It was launched in September 2007. Either you are working with an accountant or you want to do it yourself, FreeAgent provides you the accountant of your choice from their directory of trusted partners. You can also use this software without an accountant as well.

Pricing and Plans

FreeAgent has a great deal for small businesses where it offers 50% off for the first six months to their new customers.

It has three plans to select from, each plan has a 30-days free trial.

  • Limited Company

Pricing – £14.50 per month + VAT for 1st 6 months

£29 /month + VAT for next six months

  • Partnership/LLP

Pricing – £12 per month + VAT for 1st 6 months

£24 per month + VAT for next 6 months

  • Sole Trader

Pricing – £9.50 per month + VAT for 1st 6 months

£19 per month + VAT for next 6 months

Features

Here are some prominent features of the software to better understand its usability

  • It gives you an edge with professional and customizable estimates and invoices
  • It provides instant reporting of expenses, income, and profitability
  • It gives you efficient tracking of every minute spent on all projects
  • Its mobile app makes the accounting tasks quicker and easier to view and update

Why do we recommend FreeAgent?

We recommend this software because of its security mechanism which has multiple layers of security to make you confident that your data will be secure. FreeAgent is Cyber Essentials certified and has a secure server to back up your crucial data. All of your data is encrypted to avoid breaches or any unwanted interference. Along with all other features, its security makes it the best choice for you if you are more concerned about your business security.

Do You Still Need an Accountant? 

Whether or not your business will still need an accountant depends on how much accounting you need to do and how much of it you’re comfortable handling yourself. You may decide to take care of most of your business accounting internally, but outsource your taxes to an accounting firm. 

Maybe you’ll hire an internal accountant to manage your accounts year-round, including taxes. ecommerce accounting will have different needs than other small businesses. 

Think about what you need now and how you intend to grow when choosing the right accountant. Whatever accountant you choose, make sure they have specific experience in your area of business. Taxes and best practices for bookkeeping often vary by business type, so using an accountant who understands your field is essential.

Conclusion

You want to grow your ecommerce business – but you hate accounting. It definitely isn’t the most fun thing to do but still, it’s needed. If you don’t keep an eye on your finances, you could end up doing a lot of work for nothing or going bankrupt.

Choosing the right accounting software is of utmost importance. In fact, it’s as important as choosing the right ecommerce software. What will happen if you don’t choose the right accounting software? You won’t have a clear idea of how your business is performing. You will be unable to make decisions and leads to financial problems. That’s why it’s always wise to choose the right one.

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