Best Payroll Software for Employees

We’ve ranked and reviewed the best payroll software especially for small businesses. Payroll software solutions vary, but after in-depth analysis, we’ve come up with 5 free payroll apps that are the best for employees and can help any small business maximize their time and enjoy a lot more fun during tax season!

With our best payroll software for employees, we help you to calculate your employee’s expenses and income easily, so that you can keep the records all in one place. You can offer your employees an annual salary or hourly wage with a T&E log. Also, you can provide advanced features such as flexible rounding rules, foreign tax calculation, weekly or monthly schedule, payment slip customization, end-of-year summary report, etc…

Gusto


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Gusto offers three thoughtful tiers for small to midsize companies that need payroll with a few helpings of human resources (HR) features, making it the best overall choice. Each plan includes full-service automated payroll that’s suitable for almost any business, depending on needs.Pros

  • Affordable, but good value
  • Unlimited payroll runs
  • Paid time off (PTO) tracking available
  • Full-service payroll available in all states
  • Basic reports included at all tiers

Cons

  • Next day direct deposit available only in the Complete and Concierge plans
  • Dedicated support only for Concierge subscribers

Gusto is similar to other payroll software solutions in that it offers direct deposit or checks to pay your employees. It also tracks and files federal, state, and local taxes automatically. What sets Gusto apart from the other options is that it offers a better plan for each tier that you go up. Rather than removing direct deposit for the low-priced plan, Gusto increases the convenience of direct deposit the more expensive your plan. For example, direct deposit takes up to four days to clear for the lowest plan, but the high-tier plans get next-day direct deposit.

The Core plan from Gusto costs $39 per month, and $6 per employee per month, making it one of the most affordable choices for a full-service payroll plan. The Complete plan is also $39 per month, but the cost per employee is $12, and you’ll be able to offer next-day direct deposit. The Concierge plan is $149 per month and $12 per person and offers dedicated support and compliance alerts.

The heartily named Gusto is our favorite payroll software for small businesses. Its beautifully designed, full-service payroll system includes plenty of payroll and HR features, including these:

  • Automatic local, state, and federal payroll tax filing
  • Automatic end-of-year tax-form filing, including W-2s and 1099s
  • Automatic state new-hire form filing
  • Health benefits administration and workers compensation administration
  • Multiple employee benefit options, including HSAs, FSAs, commuter benefits, and college savings plans
  • Employee self-service portal for pay stub, direct deposit, and W-2 access

Even better, Gusto includes these features for free when many payroll providers charge extra. For instance, Gusto’s in-house insurance brokers ensure that if you sign up for employee medical insurance and workers compensation insurance through Gusto, you’ll pay the premium only.

In contrast, ADP, which outsources its insurance integrations, charges an extra fee on top of the premium. Ditto Paychex, which does have an in-house insurance team but still charges extra for insurance add-ons. ADP also charges extra for end-of-year tax-form filings. Gusto doesn’t.

However, in the last few months, Gusto’s customer service has taken a few hits: for instance, on the review site Trustpilot, Gusto’s rating dropped from nearly four to just 2.1 (yikes!) out of 5 from nearly than 1.3K reviews.1 In particular, users call out slow response times and payroll errors. Thanks to its expansive employee benefits and built-in free tax filing, Gusto’s still our top payroll solution, but we did lower its star rating to account for its lowering user reviews.

Additionally, while Gusto has more employee add-ons than many other online payroll systems, it’s not a total HR management solution. Our Gusto HR review can tell you more, but if you need more than the most basic HR, you’ll want to look elsewhere—like at Paychex.ProsPro BulletMore employee benefit options than most competitorsPro BulletNo extra fee for payroll tax filingPro BulletNo extra fee for insurance add-onsConsCon BulletPoor customer service ratingsCon BulletHigh monthly per-payee feeCon BulletLimited HR management and administration

Paychex Flex


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Paychex Flex offers more than 160 reports for you to get a clear look at wages, taxes, turnover, and more. Paychex is our best reporting option because it checks almost all the boxes for what you’d want in payroll software when it comes to reports and data. It also automatically files your payroll taxes, ensures compliance, and includes integrations with important programs you also use, such as accounting and benefits apps.Pros

  • 24/7 support
  • Easy to use
  • HR add-on options
  • Robust reporting feature

Cons

  • Hidden fees for setup & EOY tax docs
  • Mixed reviews from users regarding support

There’s a lot to like about Paychex. The payroll software makes it easy to set up and run payroll, it automates the submission of federal, state, and local payroll taxes, and it offers plenty of upgrade options, which you may need as your business grows. Still, the basic reporting you get from Paychex could be worth the monthly fee alone, giving it the edge in this category. Plus, you’ll be able to add any other data field you’d like, thanks to custom fields, which is rare for small business online payroll services.

While the Paychex Flex Essentials plan is $39 per month and $5 per employee, it’s difficult to say how much Paychex will cost you for the more comprehensive plans—Paychex Flex Select and Paychex Flex Pro—unless you go through the process of getting a custom quote.

One of the most important aspects of a good online payroll solution is whether it integrates with software you already use. Paychex does integrate with QuickBooks and Xero accounting software, plus many health insurance and benefits apps, time tracking and attendance software, and HR software.

Does your business need thorough HR assistance without full-on HR outsourcing? Paychex Flex combines cloud-based payroll management and human resources software for small and midsize businesses that want thorough, affordable HR management.

All Paychex payroll programs include new-hire state reporting, payroll tax filing, and an employee financial wellness program. And with three customizable packages, Paychex is one of the most scalable payroll options on our list. Growing businesses won’t have to look elsewhere for plans that support additional employees—growth is built into Paychex’s model.

Even though Paychex’s cheapest plan has a lower per-employee fee than Gusto, Paychex’s add-on fees can dramatically increase your monthly payroll costs. Unlike Gusto, OnPay, and QuickBooks Payroll, Paychex may charge additional fees for payroll tax administration, time and attendance software integration, accounting software integration, and workers comp and employee benefits administration. With all the extra fees, Paychex is better suited to midsize businesses that care more about built-in scalability than cost.ProsPro BulletCombined HR and payroll plansPro BulletAffordable starting per-payee pricePro BulletCustomizable plans for growing businessesConsCon BulletAdditional fees for payroll tax administrationCon BulletAdditional fees for third-party software integrationCon BulletPricier plans with limited pricing transparency

OnPay is the best payroll service for new employers

Best for new employers with one employeeOnPay

4 out of 5 stars

4.0

  • Starting at $36.00/mo. + $5.00/payee/mo.
  • CheckAutomatic payroll tax administration
  • CheckAffordable insurance add-ons (in-house brokers)
  • CheckDirect deposit, check, and debit card payment options

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Data as of 12/13/21. Offers and availability may vary by location and are subject to change.

Like Gusto, OnPay is a straightforward payroll and HR program with a beautiful, easy-to-use platform. If you ask, OnPay can tailor its payroll services to your industry at no additional cost. And if you just hired your first employee and are still a little unclear on the payroll process, OnPay is a great fit. Its interface is extremely intuitive—but its experts also set up the software for free, then talk you through your first run.

OnPay further stands out from the crowd by offering key payroll services for free, namely automatic tax filing and end-of-year paperwork. Plus, thanks to its in-house team of insurance brokers, you pay just the premium with no integration fees.

While we love OnPay (as do its users), it’s not the best fit for businesses that want more perks and support as they grow. The base price ($36) and per-employee price ($4) never change—but neither do the features. If you’re hoping for scalable, comprehensive HR packages, you might consider Paychex or Gusto instead.ProsPro BulletExtremely affordable full-service payrollPro BulletComprehensive payroll tax administration at no additional costPro BulletSolid employee benefits and insurance optionsConsCon BulletOne plan only (limited scalability)

Oasis

The best HR outsourcing service

TODAY’S BEST DEALSVISIT SITE

REASONS TO BUY

+Comprehensive features+Self-service platform+Fortune 500 benefits

Oasis is a Paychex-owned Professional Employer Organization (PEO) and provides a full range of full HR solutions for business, to cover the entire employee lifecycle, including of course Payroll.

This means covering everything from recruitment to onboarding, payroll and benefits, as well as development and training. Oasis also ensures regulatory compliance and mitigating risk.

Oasis does this through a combination of self-service computer software for easier employee management, to personalized support to ensure you’re getting the help you need.

Performance management also ensures that employee development works in line with your business strategy.

Because Oasis is part of Paychex, which has offices across the US, the company can offer competitive benefits and insurance packages for employees on a par with those offered by Fortune 500 companies.

QuickBooks Payroll


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If you’re already using QuickBooks for accounting, then QuickBooks Payroll is our easiest to set up option, as everything will be automated, and it’s going to be an intuitive program for any QuickBooks user. You’re unlikely to need to contact support for help because the tutorial and knowledgebase are so thorough. Even if that’s not working for you, a quick search online will send you to a multitude of walkthroughs.Pros

  • Easy setup and intuitive interface
  • Seamless integration with QuickBooks accounting software
  • Fast direct deposit options

Cons

  • Not a good value for the cost
  • Time track on the go feature not available in lowest-tier plan

QuickBooks earns our nod for the easiest setup because its user interface is so intuitive for anyone familiar with QuickBooks. In addition to customer service, there are ample resources online to get anyone on board with their payroll services. QuickBooks does a good job making establishing and running payroll simple for anyone regardless of experience.

Although QuickBooks offers excellent features, if a bit limited in its HR options, you’ll pay for them. The lowest-priced plan starts at $45 per month, plus $4 per person per month. The Premium plan costs $75 per month, plus $8 per person per month, but it also expands its features to include HR support and a payroll setup review from an expert. The Elite plan from QuickBooks costs $125 per month, plus $10 per employee per month, and you’ll get 24/7 support, plus tax penalty protection.

Conclusion

Our top payroll software reviews will reveal just how tailored these online payroll systems can be for your enterprise. These reviews can be an excellent starting place for small business owners to find the program that’s right for them. Each software is different, but they all have the same goal. They want to save you time and money. Some offer multiple service options, individualized pricing structures and more ―and our comparisons will be able to help you determine which versions best meet your needs.

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