Small Business Accounting Software Shopify

Shopify accounting software is available for your business. We offer a plethora of business functions for all types of small businesses, small shops to medium-sized e-commerce companies. Download Shopify accounting software and Get a 30 Day Free Trial  or Create Your Shopify Account . Finance your next project!

Small Business Accounting Software Shopify provides advanced accounting functions for your business. Track products and inventory, run reports, keep track of customer info, manage orders and much more!

FreshBooks

  • Available for: Web application
  • Mobile app: Android, iOS
  • Price: Plans begin at $15 per month
  • Free trial length: 30 days
  • Shopify app or integration: Yes

One of the most popular and well-known small business accounting tools available today is FreshBooks.

A promotional image of FreshBooks accounting software presented on multiple devices
Image source: Freshbooks.

Many of FreshBooks’ tools feature smart assistive technologies and automations designed to make bookkeeping easy. FreshBooks can be configured to automatically reconcile credit and debit amounts and can automatically import financial data from a range of sources. Users can also adjust access permissions on an individual basis. For example, employees can be granted limited access to financial reports, while you can give your accountants administrator privileges.

Pricing starts at $15 per user per month for the Lite plan.

Wave

  • Available for: Web application
  • Mobile app: Android, iOS
  • Price: Free
  • Free trial length: N/A
  • Shopify app or integration: No

Many of the small business accounting software tools we’ve looked at so far have been inexpensive. But for newly launched independent businesses, even inexpensive can be a little too much initially. Wave, an accounting tool designed for small businesses, understands that problem, which is why Wave is 100% free.

A screenshot of accounting tool Wave's main dashboard showing various graphs to represent financial and accounting data.
Image source: Wave.

Available for Windows and OS X, and with Android and iOS apps for invoicing and receipts, Wave is ideal for independent businesses still finding their feet. Wave can do almost everything premium accounting software tools can do, including expense management, banking reconciliation, payroll, and invoicing.

If all this sounds too good to be true, sign up for a free account and see how Wave can help you manage your business’ accounts in less time––all without spending a dime.

 ZipBooks

  • Available for: Web application
  • Mobile app: iOS
  • Price: Plans begin at $15 per month
  • Free trial length: 30 days
  • Shopify app or integration: No

Aimed at business owners who might lack experience with bookkeeping, ZipBooks is a simple, lightweight small business accounting software tool that takes the headache out of accurate accounting.

Screenshot of accounting software tool ZipBook's primary reporting dashboard.
Image source: ZipBooks.

ZipBooks keeps everything as simple as possible. The product emphasizes the basics, such as accounts receivables, so users won’t be surprised by any complicated menus or intimidating features. ZipBooks’ statements and reports are similarly clean and minimal, focusing on the essential information entrepreneurs need to run their business.

The product’s Starter plan is free and includes unlimited invoicing, basic reporting, and a single bank account connection. Additional plans start at $15 per month.

NetSuite

Another way to streamline your back office is to integrate NetSuite with your Shopify online store. NetSuite is an enterprise resource planning (ERP) system that lets you oversee most of your options without any hassle. Automate key areas like financial management, and optimize even further with NetSuite’s order, billing, customer, and inventory management features.

NetSuite offers custom accounting tools at the enterprise level. Improve control over your accounts receivable and accounts payable, as well as fixed asset management. You can also rest easy knowing NetSuite’s tax engine handles your domestic and global sales tax compliance

As an all-in-one accounting system, NetSuite’s pricing is on the high end compared to other options. But for a scalable solution that seamlessly handles your financial data and sales channels, NetSuite is a strong contender.

Cost: Contact NetSuite for a package quote tailored to your business. 

Brex customers: Simplify your payments and financials even further with the Brex + NetSuite integration.

QuickBooks Online 

QuickBooks is likely the most familiar name in business accounting software, and for good reason. It’s a Shopify-ready solution designed for small and mid-sized businesses across various industry verticals and business needs. 

Of all the options on this list, QuickBooks has some of the most impressive features. You can easily keep track of your invoicing, bank account balances, cost of goods soldprofits and lossescash flow, vendor bills, and more. Tap into receipt capture features, and hundreds of integrations with platforms like Amazon, PayPal, and Square. 

Each of the four plans gives you access to an intuitive mobile app for Apple and Android devices, as well as real-time reporting features. More advanced plans open up project management tools and let you track inventory and time. All this makes QuickBooks one of the best accounting software options for Shopify users.

Cost: QuickBooks Online starts at $12.50 per month for the Simple Start plan.

Xero

As an ecommerce business owner, you aren’t tied to any one store or location. Xero, the final Shopify accounting solution on our list, has a similar mindset. Xero’s platform includes ample features, customizable financial reports, and over 800 integrations for small, medium, and large businesses. You can manage it all from your smartphone or tablet thanks to its high-quality mobile app. 

Notably, Xero supports unlimited users on every plan, which isn’t common in the accounting universe. Add your team members, bookkeeper, accountant, or tax professional as needed. From there, you can take care of payments, accounts, and inventory with confidence.

However, you need to upgrade plans to get unlimited bank transactions. The same goes for adding multiple currencies, expense claims, and project time tracking to your ecommerce platform. 

Customers praise Xero’s user-friendly layout. By contrast, not every Xero user will prefer their customer support options. There is no live phone support, although you can reach out via email, live chat, and your Xero account. If you’re focused on features and integrations, Xero offers everything you need in a cloud accounting system. 

Cost: Xero’s accounting software starts at $9 per month for the Early plan.

Sage Business Cloud Accounting

Sage Business Cloud Accounting - homepage

Platform: Web application

Mobile App: Android, iOS

Price: Plans begin at $10 per month

Free Trial: Yes

Sage is one of our picks for the best accounting software for Shopify in large part due to its time-saving features. With automatic transaction matching, you can connect your bank account and Sage will use AI to memorize your categorization choices. Sage also includes simple invoice reporting and has a beautiful visual interface.

Pros:

  • Highly customizable
  • Industry-specific features
  • Strong inventory reporting function
  • In-depth reporting including monthly, quarterly, and annual financial reports
  • Budgeting, cash flow forecasting, job costing, auditing, and automated workflows

 Botkeeper

Botkeeper - homepage

Platform: Web application

Mobile App: no

Price: Plans begin at $79 per month

Free Trial: Yes

Botkeeper is a full-suite system that you can use to automate your bookkeeping with AI. It has an interactive dashboard that shows KPI tracking, trending analytics, data visualization, and both financial and non-financial datasets. There’s also a document manager so you can store and share your financial documents online.

Pros:

  • Detailed and accurate reports
  • Excellent user experience
  • Human-supported AI and machine learning to automate accounting tasks

Bench.co

Bench co - homepage

Platform: Web application

Mobile App: Android, iOS

Price: Plans begin at $159 per month

Free Trial: Yes

Bench.co is a human-assisted AI accounting app for Shopify. It pulls financial data from your connected bank and credit card accounts to run reports like monthly income and balance sheet statements, tax-ready financial reports, and more. Robust reporting makes Bench.co one of the best accounting software for Shopify.

Pros:

  • Suited for growing online businesses
  • Reliable, expert online support
  • Fast and easy-to-use

 Versa Cloud ERP

Versa Cloud ERP - homepage

Platform: Web application

Mobile App: no

Price: $99 per month

Free Trial: Yes

If you need multi-currency support, Versa Cloud ERP is a Shopify accounting software to look at. It gives you everything you need to run your Shopify business from a single dashboard including selling, inventory, reordering, dropshipping, returns and refunds, reporting, and more.

Pros:

  • Native Shopify store app
  • Useful and numerous integrations
  • Highly rated customer support

Zoho Books

Zoho Books - homepage

Platform: Web application

Mobile App: Android, iOS

Price: Plans begin at $90 per year

Free Trial: Yes

Zoho Books is a robust and scalable accounting app for Shopify businesses. It’s an end-to-end accounting platform that will help you from negotiations through invoicing. Zoho Books offers role-based user access so you can collaborate with team members on its integrated platform.

Pros:

  • Affordable
  • Tons of useful features
  • Easy to use

Holded

  • Available for: Web application
  • Mobile app: Android, iOS
  • Price: Plans begin at 10€ (approx. US$13) per month
  • Free trial length: 14 days
  • Shopify app or integration: Yes

Even simple accounting can be time consuming, which is why Holded aims to automate much of the busywork inherent to bookkeeping so you can get on with actually running your business.

Holded is a cloud-based accounting tool that offers real-time insights into the finances of your business. Users can integrate Holded’s general ledger with a range of financial data sources to provide at-a-glance overviews of profits and losses, forecasting and reporting, and detailed accounting histories, all with just a few clicks.

Holded is a deeply integrated accounting solution that offers major time savings. Pricing starts at roughly $11 per month, with a 14-day free trial.

Conclusion

Shopify accounting software is the best choice for starting and running a small business. It’s easy to use and can be used in any country and on any device from any location.

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